brainpy.layers.Reservoir#

class brainpy.layers.Reservoir(input_shape, num_out, leaky_rate=0.3, activation='tanh', activation_type='internal', Win_initializer=Normal(scale=0.1, rng=[1534053657  822008870]), Wrec_initializer=Normal(scale=0.1, rng=[1534053657  822008870]), b_initializer=ZeroInit, in_connectivity=0.1, rec_connectivity=0.1, comp_type='dense', spectral_radius=None, noise_in=0.0, noise_rec=0.0, noise_type='normal', seed=None, mode=None, name=None)[source]#

Reservoir node, a pool of leaky-integrator neurons with random recurrent connections [1].

Parameters:

  • input_shape (int, tuple of int) – The input shape.

  • num_out (int) – The number of reservoir nodes.

  • Win_initializer (Initializer) – The initialization method for the feedforward connections.

  • Wrec_initializer (Initializer) – The initialization method for the recurrent connections.

  • b_initializer (optional, ArrayType, Initializer) – The initialization method for the bias.

  • leaky_rate (float) – A float between 0 and 1.

  • activation (str, callable, optional) –

    Reservoir activation function.

    • If a str, should be a brainpy.math.activations function name.

    • If a callable, should be an element-wise operator.

  • activation_type (str) –

    • If “internal” (default), then leaky integration happens on states transformed by the activation function:

    \[r[n+1] = (1 - \alpha) \cdot r[t] + \alpha \cdot f(W_{ff} \cdot u[n] + W_{fb} \cdot b[n] + W_{rec} \cdot r[t])\]

    • If “external”, then leaky integration happens on internal states of each neuron, stored in an internal_state parameter (\(x\) in the equation below). A neuron internal state is the value of its state before applying the activation function \(f\):

      \[\begin{split}x[n+1] &= (1 - \alpha) \cdot x[t] + \alpha \cdot f(W_{ff} \cdot u[n] + W_{rec} \cdot r[t] + W_{fb} \cdot b[n]) \\ r[n+1] &= f(x[n+1])\end{split}\]

  • in_connectivity (float, optional) – Connectivity of input neurons, i.e. ratio of input neurons connected to reservoir neurons. Must be in [0, 1], by default 0.1

  • rec_connectivity (float, optional) – Connectivity of recurrent weights matrix, i.e. ratio of reservoir neurons connected to other reservoir neurons, including themselves. Must be in [0, 1], by default 0.1

  • comp_type (str) –

    The connectivity type, can be “dense” or “sparse”, “jit”.

    • "dense" means the connectivity matrix is a dense matrix.

    • "sparse" means the connectivity matrix is a CSR sparse matrix.

  • spectral_radius (float, optional) – Spectral radius of recurrent weight matrix, by default None.

  • noise_rec (float, optional) – Gain of noise applied to reservoir internal states, by default 0.0

  • noise_in (float, optional) – Gain of noise applied to feedforward signals, by default 0.0

  • noise_type (optional, str, callable) – Distribution of noise. Must be a random variable generator distribution (see brainpy.math.random.RandomState), by default “normal”.

  • seed (optional, int) – The seed for random sampling in this node.

References

__init__(input_shape, num_out, leaky_rate=0.3, activation='tanh', activation_type='internal', Win_initializer=Normal(scale=0.1, rng=[1534053657  822008870]), Wrec_initializer=Normal(scale=0.1, rng=[1534053657  822008870]), b_initializer=ZeroInit, in_connectivity=0.1, rec_connectivity=0.1, comp_type='dense', spectral_radius=None, noise_in=0.0, noise_rec=0.0, noise_type='normal', seed=None, mode=None, name=None)[source]#

Methods

__init__(input_shape, num_out[, leaky_rate, ...])

clear_input()

cpu()

Move all variable into the CPU device.

cuda()

Move all variables into the GPU device.

get_delay_data(identifier, delay_step, *indices)

Get delay data according to the provided delay steps.

load_state_dict(state_dict[, warn, compatible])

Copy parameters and buffers from state_dict into this module and its descendants.

load_states(filename[, verbose])

Load the model states.

nodes([method, level, include_self])

Collect all children nodes.

register_delay(identifier, delay_step, ...)

Register delay variable.

register_implicit_nodes(*nodes[, node_cls])

register_implicit_vars(*variables[, var_cls])

reset(*args, **kwargs)

Reset function which reset the whole variables in the model.

reset_local_delays([nodes])

Reset local delay variables.

reset_state([batch_size])

Reset function which reset the states in the model.

save_states(filename[, variables])

Save the model states.

state_dict()

Returns a dictionary containing a whole state of the module.

to(device)

Moves all variables into the given device.

tpu()

Move all variables into the TPU device.

train_vars([method, level, include_self])

The shortcut for retrieving all trainable variables.

tree_flatten()

Flattens the object as a PyTree.

tree_unflatten(aux, dynamic_values)

Unflatten the data to construct an object of this class.

unique_name([name, type_])

Get the unique name for this object.

update(x)

Feedforward output.

update_local_delays([nodes])

Update local delay variables.

vars([method, level, include_self, ...])

Collect all variables in this node and the children nodes.

Attributes

global_delay_data

Global delay data, which stores the delay variables and corresponding delay targets.

mode

Mode of the model, which is useful to control the multiple behaviors of the model.

name

Name of the model.

pass_shared