brainpy.channels.INa_Ba2002#

class brainpy.channels.INa_Ba2002(size, keep_size=False, T=36.0, E=50.0, g_max=90.0, V_sh=-50.0, method='exp_auto', name=None, mode=None)[source]#

The sodium current model.

The sodium current model is adopted from (Bazhenov, et, al. 2002) [1]. It’s dynamics is given by:

\[\begin{split}\begin{aligned} I_{\mathrm{Na}} &= g_{\mathrm{max}} * p^3 * q \\ \frac{dp}{dt} &= \phi ( \alpha_p (1-p) - \beta_p p) \\ \alpha_{p} &=\frac{0.32\left(V-V_{sh}-13\right)}{1-\exp \left(-\left(V-V_{sh}-13\right) / 4\right)} \\ \beta_{p} &=\frac{-0.28\left(V-V_{sh}-40\right)}{1-\exp \left(\left(V-V_{sh}-40\right) / 5\right)} \\ \frac{dq}{dt} & = \phi ( \alpha_q (1-h) - \beta_q h) \\ \alpha_q &=0.128 \exp \left(-\left(V-V_{sh}-17\right) / 18\right) \\ \beta_q &= \frac{4}{1+\exp \left(-\left(V-V_{sh}-40\right) / 5\right)} \end{aligned}\end{split}\]

where \(\phi\) is a temperature-dependent factor, which is given by \(\phi=3^{\frac{T-36}{10}}\) (\(T\) is the temperature in Celsius).

Parameters:

  • g_max (float, ArrayType, Callable, Initializer) – The maximal conductance density (\(mS/cm^2\)).

  • E (float, ArrayType, Callable, Initializer) – The reversal potential (mV).

  • T (float, ArrayType) – The temperature (Celsius, \(^{\circ}C\)).

  • V_sh (float, ArrayType, Callable, Initializer) – The shift of the membrane potential to spike.

References

See also

INa_TM1991

__init__(size, keep_size=False, T=36.0, E=50.0, g_max=90.0, V_sh=-50.0, method='exp_auto', name=None, mode=None)[source]#

Methods

__init__(size[, keep_size, T, E, g_max, ...])

clear_input()

cpu()

Move all variable into the CPU device.

cuda()

Move all variables into the GPU device.

current(V)

dp(p, t, V)

dq(q, t, V)

f_p_alpha(V)

f_p_beta(V)

f_q_alpha(V)

f_q_beta(V)

get_delay_data(identifier, delay_step, *indices)

Get delay data according to the provided delay steps.

load_state_dict(state_dict[, warn, compatible])

Copy parameters and buffers from state_dict into this module and its descendants.

load_states(filename[, verbose])

Load the model states.

nodes([method, level, include_self])

Collect all children nodes.

register_delay(identifier, delay_step, ...)

Register delay variable.

register_implicit_nodes(*nodes[, node_cls])

register_implicit_vars(*variables[, var_cls])

reset(V[, batch_size])

Reset function which reset the whole variables in the model.

reset_local_delays([nodes])

Reset local delay variables.

reset_state(V[, batch_size])

Reset function which reset the states in the model.

save_states(filename[, variables])

Save the model states.

state_dict()

Returns a dictionary containing a whole state of the module.

to(device)

Moves all variables into the given device.

tpu()

Move all variables into the TPU device.

train_vars([method, level, include_self])

The shortcut for retrieving all trainable variables.

tree_flatten()

Flattens the object as a PyTree.

tree_unflatten(aux, dynamic_values)

Unflatten the data to construct an object of this class.

unique_name([name, type_])

Get the unique name for this object.

update(tdi, V)

The function to specify the updating rule.

update_local_delays([nodes])

Update local delay variables.

vars([method, level, include_self, ...])

Collect all variables in this node and the children nodes.

Attributes

global_delay_data

Global delay data, which stores the delay variables and corresponding delay targets.

mode

Mode of the model, which is useful to control the multiple behaviors of the model.

name

Name of the model.

varshape